Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSAPVEALFQPFRLGALELPTRVVMAPMTRNFSPGGVPNAKVVEYYRRRAAAGVGLIVSEGTTVGHKAANGYPNVPRFYGEDALAGWKQVVDAVHAEGGRIVPQLWHVGSVRRLGVEPDASVPGYGPMEKAKDGKVLVHGMSKA-----------DIQEVIAAFAQAARDAQAIGMDGVEIHGAHGYLIDQFFWEGSNQRDDEYGGSLANRSRFAVELVRAVRAAVGADFPIIFRFSQWKQQDYSARLVETPEGLREFLA-PLVEAGVDIFHCSTRRF--WIP---EFEGSELNLAGWTRELTGKPTITVGNVGLDGSEFLQFFGKTDEVAQPASIDGLVERLDKGEFDLVAVGRALLVDPEWAVKVREGRIGDIKPFSREALASLV |
| 1VJI Chain:A ((12-334)) | -------LLTPYKMGRFNLSHRVVLAPLTRQRSYGNVPQPHAAIYYSQRTTPG-GFLITEATGVS-DTAQGYQDTPGIWTKEHVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNSGFQPNGKAP-ISCSDKPLMPQIRSNGIDEALFTPPRRLGIEEIPGIVNDFRLAARNAMEAGFDGVEIHGANGYLIDQFMKDTVNDRTDEYGGSLQNRCKFPLEIVDAVAKEIGPDR-VGIRLSPFA--DYMESGDTNPGALGLYMAESLNKYGILYCHVIEARMHTLMPMRKAFKGTFISAGGFTRE--------------DGN----------------------EAVSKGRTDLVAYGRWFLANPDLPKRFQVDAPLNKYDRPTFYTSDPV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VJI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -150323 for 2583 contacts (-58.2/contact) +
2D Compatibility (PS) -32350 + (NN) -16075 + (LL) 2736
1D Compatibility (HY) -24400 + (ID) 6000
Total energy: -226412.0 ( -87.65 by residue)
QMean score : 0.557
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