Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLCNVVVLISGSGSNLQALIDSLRDGATPARIRAVISNRADAYGLERARQAGIQTEVLDHKAYADRESFDEALAQRIDAHEPHLVILAGFMRILSADFVRHYQGRLLNIHPSLLPRHKGLHTHQRALEAGDREHGCSVHFVTEELDGGPLVVQAVIPVESQDTPERLARRVHEEEHRIYPLAMRWFAEGRLRLGEQGALLDGQALPATGHQIRTKEIRNA
1RBZ Chain:B ((3-197))
------VAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGENGKICWV------------------
General information:
TITO was launched using:
RESULT:
Template:
1RBZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149468 for 1590 contacts (-94.0/contact) +
2D Compatibility (PS) -22009 + (NN) -15009 + (LL) 1428
1D Compatibility (HY) -19600 + (ID) 4800
Total energy: -209458.0 ( -131.73 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_1RBZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RBZ-query.scw
PDB file :
Tito_Scwrl_1RBZ.pdb
: