Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSSEPLEPNQDVIIPRSRDSLGRPVYKAQLTRTDNQSEKVALIRQTAPLPVIFIPGIMGTNLRNKADKSEVWRPPNGLWPMDDLFASIGALWTWAWRGPKARQELLKAEQVEVDDQGTIDVGQSGLSEEAARLRGWGK-VMRSAYNPVMGLMERRLDNIVSRRELQAWWNDEALSPPGDQGEEQGKVGPIDEEELLRASRYQFDVWCAGYNWLQSNRQSALDVRDYIENTVLPFYQKECGLDPEQMRRMKVILVTHSMGGLVARALTQLHGYERVLGVVHGVQPATGSSTIYHHMRCGYEGIAQVV-----LGRNAGEVTAIVAN------SAGALELAPSAEYREGRPWLFLCDAQGQVLKDIDGKPRAY---------PQNQ----DPYEEIYKNTTWYGLVPEQNSQYLDMSDKKE----GLRVGPR-------------DNFEDLIDSIANFHGELSAAG-------YHSETYAHYGADDSRHSWRDLIWKGDPTPLETPGATLNDDENGTYNSWFRRGLPTIVQGPLETGNPLDASGSGGDETVPTDSGQAPALAGVKASFRHGSKGKGQANTKRGYEHQESYNDARAQWAALYGVIKITQLADWHPNDKGGT |
| 4GA6 Chain:A ((1-493)) | -------------------------MKAKIRILDMFSGRYTVLI-------------------NEEDAKEA-----KLHPDDLVKIEAGK----------------KAVYGSVALSNLVGKGEVGISRDVLDLHNFSEGETVSVIPAGTPESVRYIKKKMHGEKLRKVEIEAIVRDIVD-----RKLRDIEISSFVTALEIN-----------------GLD-MDEIAALTIAMAETGDMLDIDR----KPIMDVHSIGGVPGNKTNILVVP--IVAAAGLTIPKTSSRAI-----TSAAGTADVVEVFADVSFSLDEIKRIVEKVGACLVWGGALNLAPADDITIKAERALSIDPTGLMLASIMSKKYAMGSQYVLIDIPTGKGVKVETVEEARSLARDFIELGKRLGQYVEVAITYGGQPIGHTVGPALEAREALSALMTGKGPGSLIEKATGLAGILLEMGGVAPAGTGKKMAKEILESGKAWEKMKEIIEAQGGDPNIKPEEIPIGDKTYTFTAATSGYVTAIDNRAITA--IARAAGA------PEDKG-----AGIELYVKVGEKVKEGDPLFTIHAEHEARLDQAIVLARRTEPIRIE------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GA6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 75216 for 3699 contacts (20.3/contact) +
2D Compatibility (PS) -45829 + (NN) 525 + (LL) 6348
1D Compatibility (HY) -8400 + (ID) 4800
Total energy: 23060.0 ( 6.23 by residue)
QMean score : 0.096
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