Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSLPHCETLLLEPIEGVLRITLNRPQSRNAMSLAMVGELRAVLAAVRDDRSVRALVLRGA-DGHFCAGGDIK---DMAGAR-AAGAEAYRTLNRAFGSLLEEAQAAPQLLVALVEGAVLGGGFGLACVSDVAIAAADAQFGLPETSLGILPAQI-APFVVRRIGLTQARRLALTAARFDGREALRLGLVHFCEADADALEQRLEETLEQLRRCAPNANAATKALLLASESGELG--ALLDDAARQFAEAVGGAEGSEGTLAFVQKRKPVWAQ |
3T88 Chain:E ((36-284)) | --------------DGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLD-----FQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLAD-LEKETVRWCREMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMT---EEGQEGRNAFNQKRQPDFSK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3T88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -114667 for 1857 contacts (-61.7/contact) +
2D Compatibility (PS) -25848 + (NN) -9783 + (LL) 1336
1D Compatibility (HY) -10400 + (ID) 4150
Total energy: -163512.0 ( -88.05 by residue)
QMean score : 0.425
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