Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIKIKRGLDLPISGAPEQRIEAARPVRSVALIGFDYHGMKPTMAVQVGDRVKLGQVLFTDKKNP----SVSYTAPGAGVVSAIHRGEKRVLQSVVIDLDGDEQLEFARYPADKLATLSAEQVRDNLLQSGLWTALRTRPFSKVPDPESSPSSIFVTAIDTQPLAADPQVVIAEQGEAFQAGLTVLGRLARVFLCKAEGVSLPGEALSGVTAQAFSGPHPAGLPGTHIHFLDPVGAGKSVWNLNYQDVIAIGKLFTTGQLWTERVIALAGPVVEKPRLVRTRLGANLDELAAGQLQPGNNRLISGSVLGGRTAHGAYAYLGRYHLQLSCLKEGDQREFLHYLRAGVEKHSLLNVFVSRLLGGKRFAFTTSTNGSPRAMVPVGNYEAVMPLDILPTQLLRYLIVGDTEMAQKLGALELDEEDLALCSYVCAGKYEYGPILRDNLARIEQEG-- |
4CC9 Chain:A ((17-336)) | -------------------------------------------RHLIFSRFRPISVFREANEDESGFTCCAFSARERFLMLGTCTG-----QLKLYNVFSGQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWGMKS-----------VFDMKHSFTEDHYVEFSKHSQDRVIGTK--GDIAHIYDIQ-----------TGNKLLTLFNPDLANNYKRNCATFNPTD----------------DLVLNDGVLWDVR----SAQAIHKFD--------KFNMNISGVFHPNGLEVIINTEIWDLRTF--------------------------HLLHTVPALDQCRVVFNH--TGTVMYGAMLQSP---------FGSSFRTFNATDYKPIATIDVK-----RNIFDLCTDTKDCYLAVIENQGSMDAL--NMDTVCRLYEVGRQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4CC9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -39420 for 2369 contacts (-16.6/contact) +
2D Compatibility (PS) -32305 + (NN) -9963 + (LL) 10364
1D Compatibility (HY) -7600 + (ID) 2000
Total energy: -80924.0 ( -34.16 by residue)
QMean score : 0.151
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