Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDINEIREYLPHRYPFLLVDRVVELDIEGKRIRAYKNVSINEPFFNGHFPEHPIMPGVLIIEAMAQAAGILGFKML---DVKPADGTLYYFVGSDKLRFRQPVLPGDQLQLHAKFISVKRSIWKFDCHATVDDKPVCSAEI--ICAERKL
3DP3 Chain:D ((14-158))
---IEHILQILPHRYPMLLVDRITELQ-ANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAER--
General information:
TITO was launched using:
RESULT:
Template:
3DP3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114603 for 1032 contacts (-111.0/contact) +
2D Compatibility (PS) -14945 + (NN) -5293 + (LL) 784
1D Compatibility (HY) -16800 + (ID) 3550
Total energy: -154407.0 ( -149.62 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_3DP3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DP3-query.scw
PDB file :
Tito_Scwrl_3DP3.pdb
: