Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVEPQEGKTRFHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRG--QDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDM-GFIPQVRQIIRQTPHKGERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQ-HVYAVAGSDKYKLLYNLVAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPE------DPDDYVHRIGRTGRAGASGTSISFAGEDDAFA-LPPIEELLGRKITCEMPPAELLKPVPRKH |
| 3RRM Chain:A ((11-370)) | --------------GLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRV----NPED---ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPD-SFEKN-KQINAQ---VIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPK--DTQLVLFSATFADAVRQYAKKIVPNANTLEL----VNVDAIKQLYMDCKNEADKFDVLTELYGVMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------DIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RRM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -238053 for 2749 contacts (-86.6/contact) +
2D Compatibility (PS) -36840 + (NN) -18544 + (LL) 3436
1D Compatibility (HY) -26800 + (ID) 5950
Total energy: -322751.0 ( -117.41 by residue)
QMean score : 0.525
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