Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNAMQVLRTWAARGVQWVGVAGVIGLSGAAQAGDYDGSPQVAEFVSEMTRDYGFAGEQLMGLFRDVNRKQSILDAISRPAERVKQWKEYRPIFISDARISRGVDFWNKHAEDLARAEKEYGV-------PAEIIVSII-GVETFFGRNTGSYRVMDALSTLGFDYPP-RA-DFFRKELREFLLLAREQQVDPLSLTG-SYAGAMGLPQFMPSSFRAYAVDFDGDGHINIWSDPTDAIGSVASYFKQHGW-VTGEPVVSVAEINDESAESAVTRGVDPTMSLGELRARGWRTHDALRDDQKVTAMRFVGDKGIEYWVGLPNFYVITRYNRSAMYAMAVYQLAGEIARARGAH |
| 4RGP Chain:A ((2-256)) | --------------------------------------NATEQETLTILLDVY-----AYYQAYQIVKASQFFSDDIIFLLELLKERRELN------------VDFLFQNQVHLQELELTYHISLLDNAYEEELLANYIMDLEAKL-RNDHIIDFVRSVSPILYRLL-MRLMQSQVADINDYIYDAKNDQYDTWKFDKMH------------DSANPFVQNFVAKGR-----DSKITSRSLADFIQLTDLPQAIKDNILLLRDFEKSVRNPLAHLIKPFDEEELHRTTGFSSQTFLEKIIQLAVFS-----GIHY-------------DNDKFYFDKVNELIKRIYQ----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RGP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -44938 for 1748 contacts (-25.7/contact) +
2D Compatibility (PS) -25160 + (NN) -4267 + (LL) 5376
1D Compatibility (HY) -14800 + (ID) 2150
Total energy: -85939.0 ( -49.16 by residue)
QMean score : 0.229
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