Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALTNEDIINAVSEMSVMQVVELIKAMEEKFGVT-----AAAATVAAAGPAAAAAEEQTEFTIVLAEAGDKKVNVIKVVRELTGLGLKEAKAVVDGAPG---VVKEGASKEEAEAAKKALEEAGAKVELK
1DD3 Chain:A ((1-128))
--MTIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQEEKTEFDVVLKSFGQNKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVELK
General information:
TITO was launched using:
RESULT:
Template:
1DD3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43274 for 783 contacts (-55.3/contact) +
2D Compatibility (PS) -13718 + (NN) -8312 + (LL) 352
1D Compatibility (HY) -11200 + (ID) 3450
Total energy: -79602.0 ( -101.66 by residue)
QMean score : 0.707
(partial model without unconserved sides chains):
PDB file :
Tito_1DD3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DD3-query.scw
PDB file :
Tito_Scwrl_1DD3.pdb
: