Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQRVYVALGSNLAEPREQIQAALDAFERLPETRLVAVSPLYISDPLGPADQPRFVNGVAALDTNLAPLDLLDALQAIELEQGRVRDL-RWGPRTLDLDILLFGEQLLDLPRLKVPHYHMQARAFVLYPLADLAPDLRLPDGRHLPELLAACPFEGIERLPGA
3HD1 Chain:A ((4-157))
-----YIAIGSALASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK----
General information:
TITO was launched using:
RESULT:
Template:
3HD1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111365 for 1117 contacts (-99.7/contact) +
2D Compatibility (PS) -16155 + (NN) -7189 + (LL) 832
1D Compatibility (HY) -16800 + (ID) 3900
Total energy: -154577.0 ( -138.39 by residue)
QMean score : 0.679
(partial model without unconserved sides chains):
PDB file :
Tito_3HD1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HD1-query.scw
PDB file :
Tito_Scwrl_3HD1.pdb
: