Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNYKLLYFNMRGRAEIIRYIFAYLDIKYEDHRIEQADWPKIKPTLPFGKIPVLEVEGLTIHQSLAIARYLTKNTDLAGKTALEQCQADAVVDTLDDFMSLFPWAEKDQDLKERMFNELLTHQAPRLLKDLDTYLGDKEWFIGNYVTWADFYWDICSTTLLVLKPGLLDIYPKLVSLRNKVQAIPAISAWILKRPQTKL
3VI5 Chain:C ((1-198))
-PNYKLTYFNMRGRAEIIRYIFAYLDIQYEDHRIEQADWPEIKSTLPFGKIPILEVDGLTLHQSLAIARYLTKNTDLAGNTEMEQCHVDAIVDTLDDFMSCFPWAEKKQDVKEQMFNELLTYNAPHLMQDLDTYLGGREWLIGMSVTWADFYWEICSTTLLVFKPDLLDNHPRLVTLRKKVQAIPAVANWIKRRPQTKL
General information:
TITO was launched using:
RESULT:
Template:
3VI5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137177 for 1424 contacts (-96.3/contact) +
2D Compatibility (PS) -21037 + (NN) -8197 + (LL) 208
1D Compatibility (HY) -28000 + (ID) 7900
Total energy: -202103.0 ( -141.93 by residue)
QMean score : 0.616
(partial model without unconserved sides chains):
PDB file :
Tito_3VI5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VI5-query.scw
PDB file :
Tito_Scwrl_3VI5.pdb
: