Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQPSPPPTELVPSERAVVLLSCALSALGSGLLVATHALWPDLRSRARRLLLFLS-----LADLLSA--ASYFYGVLQNFAGPSWDCVLQGALSTFAN-------TSSFFWTVAIALYLYLSIVRAARGPRTDRLLWAFHVVSWGVPLVITVAAVALKKIG----YDASDVSVGW--------------CWIDLEAKDHVLWMLLTGKLWEMLAYVLLPLL------YLLVRKHINRAHTALSEYRPILSQEHR--------LLRHSSMADKKLVLI----------------PLIFIGLRVWSTVRF----VLTLCGSPAVQ-----TPVLVVLHGIGNTFQGGANCIMFVLC-------------------TRAVRTRLFSLCCCCCSSQPPTKSPAGTPKAPAPSKPGE-SQESQGTPGELPST |
3LFM Chain:A ((16-489)) | ----PRGSHMTPKDD--EFYQQWQLKYPKLILREASSVSEELHKEVQEAFLTLHKHGCLFRDLVRIQGKDLLTPVSRILIGNPGCTYKYLNTRLFTVPWPVKAEIAAACETFLKLNDYLQIETIQALEELAADEVDIKSRAAYNVTLLNFMDPQKMPYLKEEPYFGMGKMAVSWHHDENLVDRSAVAVYSYSCEGRDPDIWHVGFKISWDIETPGLAIPLHQGDCYFMLDDLNATHQHCVLAGSQPRFSSTHRVAECSTGTLDYILQRCQLALQNVCDDVDNDDVSLKSFEPAVLKQGEEIHNEVEFEWLRQFWFQGNRYRKCTDWWCQPMAQLEALWKKMEGVTNAVLHEVKREVEQRNEILTAILASLTARQNLRREWHARCQSRIARTPADQKPECRPYWEKDDASMPLPFDLTDIVSELRGQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LFM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -171725 for 2259 contacts (-76.0/contact) +
2D Compatibility (PS) -34630 + (NN) -14037 + (LL) 496
1D Compatibility (HY) -2800 + (ID) 2300
Total energy: -224996.0 ( -99.60 by residue)
QMean score : 0.151
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