Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MASPSLPGSDCSQIIDHSHVPEFEVATWIKITLILVYLIIFVMGLLGNSATIRVTQVLQKKGYLQKEVTDHMVSLACSDILVFLIGMPMEFYSIIWNPLTTSSYTLSCKLHTFLFEACSYATLLHVLTLSFERYIAICHPFRYKAVSGPCQVKLLIGFVWVTSALVALPLLFAMGTEYPLVNVPSHRGLTCNRSSTRHHEQPETSNMSICTNLSSRWTVFQSSIFGAFVVYLVVLLSVAFMCWNMMQVLMKSQKGSLAGGTRPPQ-----------------------LRKSESEE-SRTARRQTIIFLRLIVVTLAVCWMPNQIRRIM---AAAKPKHDWTRSYFRAYMILLPFSETFFYLSSVINPLLYTVSSQQFRRVFVQVLCCRLSLQHANHEKRLRVHAHSTTDSARFVQRPLLFASRRQSSARRTEKIFLSTFQSEAEPQSKSQSLSLESLEPNSGAKPANSAAENGFQEHEV |
4XNV Chain:A ((38-382)) | -------SFKCALTKTG----------FQFYYLPAVYILVFIIGFLGNSVAIWMFVFHMKPW---SGISVYMFNLALADFLYVLTLPALIFYYFNKTDWIFG--DAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYPKSLGRLKKK-NAICISVLVWLIVVVAISPILFYSGTGVR-----KNKTITCYDTTSDEY-------------LRSYFIYSMCTTVAMFCVPLVLILGCYGLIVRALIYKMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIVCPLCGVGKDQFEEVEEPLRRKSIYLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQTPAMCAFNDRVYATYQVTRGLASLNSCVNPILYFLAGDTFRRR--------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -198523 for 2314 contacts (-85.8/contact) +
2D Compatibility (PS) -32249 + (NN) -8895 + (LL) 9408
1D Compatibility (HY) -28400 + (ID) 3550
Total energy: -262209.0 ( -113.31 by residue)
QMean score : 0.278
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