Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSQQNTSGDCLFDGVNELMKTLQFAVHIPTFVLGLLLNLLAIHGFSTFLKNRWPDYAATSIYMINLAVFDLLLVLSLPFKMVLSQVQSPF-PSLCTLVECLYFVSMYGSVFTICFISMDRFLAIRYPLLVSHLRSPRKIFGICCTIWVLVWTGSIPIYSFHGKVEK---YMCFHNMSDDTWSAKVFFPLEVFGFLLPMGIMGFCCSRSIHILLGRR-----------DHTQDWVQQKACIYSIAASLAVFVVSFLPVHLGFFLQFLVRNS----------FIVECRAKQSISFFLQ---LSMCFSNVNCCLDVFCYYFVIKE-------FRMNIRAHRPSRVQLVLQDTTISRG---------------------------------------------------------------------------------------------------------------------------- |
3ODU Chain:A ((37-502)) | --------PCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLR----SMTDKYRLHLSVADLLFVITLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVLFQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ODU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -244083 for 1993 contacts (-122.5/contact) +
2D Compatibility (PS) -31075 + (NN) -1475 + (LL) 224
1D Compatibility (HY) -14000 + (ID) 3400
Total energy: -293809.0 ( -147.42 by residue)
QMean score : 0.120
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