Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------MGRGNSTEVTEFHLLGFGVQHEFQHVLFIVLLLIYVTSLIGNI---GMILLIKTDSRLQTPMYFFPQHLAFV--DICYTSAITPKMLQSFTEENNLITF-----RGCVIQFLVYATFATS---------DCYLLAIMAMDCYVAICKP--LRYPMIMSQTVYIQLVAGSYIIGSINASVHTGFTFSLSFCKSNKINHFFCDGLPILALSCSNIDINII----LDVVF--VGFDLMFTELVIIFS-----YIYIMVTILKMSSTAGRKKSFSTCASHLTAVTIFYG----TLSYMYLQPQSNNSQENMKVASIFYGTVIPMLNPLIYSLRNKEGK----------------- |
| 2VN8 Chain:A ((18-375)) | LYFQSMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFFMASGPCLDDIAELVD--AGKIRPVIEQTFPFSKVPEAFLKVERGHARGKTVINVV |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2VN8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -277939 for 2249 contacts (-123.6/contact) +
2D Compatibility (PS) -30775 + (NN) 4412 + (LL) 336
1D Compatibility (HY) 800 + (ID) 1500
Total energy: -304666.0 ( -135.47 by residue)
QMean score : 0.186
|
|
|