Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------MNWVNKSVPQEFILLVF-SDQPWLEIPPFVMFLFSYILTIFG-----NLTIILVSHVDFKLHTPMYFFLSNLSLLDLCYTTSTVPQMLVNICNTRKVISYGGCVAQLFIFLALGSTECLLLAVMCFDRFVAICRPLHYSIIMHQRLCFQLAAASWISGFSNSVLQSTWTLKMPLCGHKEVDHFFCEVPALLKLSCV-------DTTANEAELFFISVLFLLIPVTLILISYAFIVQAVLRIQSAEGQ----RKAFGTCGSHLIVVSLFYGTAISMYLQPPSPSSKDRGK-------MVSLFCGIIAPMLNPLIYTLRNKEVKEAFKRLV--AKSLLNQEIRNMQMISFAKDTVLTYLTNFSASCPIFVITIENYCNLPQRKFP |
| 1U19 Chain:A ((4-349)) | MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSN---------FRFGENHAIMGVAFTWVMALACAAPPLVGWSRY------IPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDD-------EASTTVSKTETSQVAPA-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1U19.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -201105 for 2457 contacts (-81.8/contact) +
2D Compatibility (PS) -30760 + (NN) 8830 + (LL) 3872
1D Compatibility (HY) 2800 + (ID) 1000
Total energy: -217363.0 ( -88.47 by residue)
QMean score : 0.147
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