Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MANLSQPSEFVLLGFSSFGELQALLYGPFLMLYLLAFMGNTIIIVMVIADTHLHTPMYFFLGNFSLLEILVTMTAVPRMLSDLLVPHKVITFTGCMVQFYFHFSLGSTSFLILTDMALDRFVAICHPLRYGTLMSRAMCVQLAGAAWAAPFLAMVPTVLSRAHLDYCHGDVINHFFCDNEPLLQLSCSDTRLLEFWDFLMALTFVLSSFLVTLISYGYIVTTVLRIPSASSCQKAFSTCGSHLTLVFIGYSSTIFLYVRPGKAHSVQVRKVVALVTSVLTPFLNPFILTFCNQTVKTVLQ-GQMQRLKGLCKAQ |
2VPZ Chain:C ((2-251)) | AEFYGLPN-------------AQEFWHWTNALHFVLVGLAGGVALLAALLHLKGDA----------EARRYTLYALMLIALDLFILWAESPARFRFTHIWLFLSFHPTSPIWWGAWGLGLGFLTGGLLYLGKGSQRAL--AWALLVFSLVALSYPGLALAVNLNR----------------------------PLWNGLMAGLFPLTALVLALGLAALLKSPWAL----FPLRVLAGASLLLALLYPLTLPPEARGHLLEEAGFWYGLFLLLGLGTFWQERLAPWAGLLAAAGLRALLVLAGQWQGLG------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VPZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -250249 for 1973 contacts (-126.8/contact) +
2D Compatibility (PS) -25038 + (NN) -907 + (LL) 3960
1D Compatibility (HY) -5600 + (ID) 1600
Total energy: -279434.0 ( -141.63 by residue)
QMean score : 0.169
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