Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------MNKINDRDLTELSSYWVYQDINKDNDFTVNGKRFKQVDEYNDNGNKNKKGASDLKIYELLDEKGKPTGEQTMIYQGTSNEAINPNN----PLKSLDIGDDWLQNAKLMDNSNKST--DYLKQSDEFADLYRDKLNDANKLSK-----------------YNFTQKYGVSPNNYK--NKTIVADGGNSEGGAGAKYQGAKHPNEKVVATDPAMVPYAAWQKFARPRFDNMISFNSTNDLLTWLQ----DPFI----KDMPGKRVNISDGVPRLDALIDSHVGYKRKLNRKDNTYDTVPLIKIKSVKD---TEIKNGKKV---KKTINITLDMDGRIPINVWTGDSIARS-GRGTLIKLNLENLDALSKLITGETSGM-------------------LAECVIFLNESFN---ISENENKNFADRKQQLSEGFKDKINLFQLEEMERTLISKINS----------LEEVADETIESISAVKHLLPDFALDALKERINELFK-GIKSFIE---KVYDSIDNEILEIFKNIDHD--FRDGV-SEEMMKHLKVVKQNIERIKNQNDIYGRQIAE-------IRSIMKQQDATILDGNFQINCSGENMVQGLVIPSNYLGR--KMKILKDHIDDGIKKIADYVQSIYDEYASKIVDVI--KYLINTIPKIRKNLRH---AIEMLNVKKKEFLSLIPNVTCNYIKTKLEELDNTLGKWEPFLNDLKAVSPILDNHLDDIVKNMKPLIVQMLFEPSHYD---DMFILNTQAHARLDQMAQQFEVVCNGLNENEGQAIQTMDQSASLIRSNLIQVKEQLEKLAVY----- |
| 3AHC Chain:A ((25-826)) | VIGTPWQKLDRPVSEEAIEGMDKYWRVTNYMSIGQIYLR----------SNPLMKEPFTRDDVK-HRLVGHWG--TTPGLNFLLAHINRLIADHQQNTVFIMGPGHGGPAGTSQSYVDGTYTEYYPNITKDEAGLQKFFRQ-FSYPGGIPSHFAPETPGSIHEGGELGYALSHAYGAVMNNPSLFVPCIIGDGEAETGPLATGWQSNKLVN---PRTDGIVLPILHLNGY-KIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFRTPKGWTCPKFIDGKKTEGSWRAHQVPLASARDTEEHFEVLKGWMESYKPEELFNADGSIKDDVTAFMPKGELRIGANPNANGGVIREDLKLPELDQYEVTGVKEYGHGWGQVEAPRALGAYCRDIIKNNPDSFRIFGPDETASNRLNATYEVTDKQWDNGYLSGLVDEHMAVTGQVTEQLSEHQCEGFLEAYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVTSLLINKTFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQPAPTWVTLDEARAELEAGAAEW-KWASNAENNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVV--DLLKLQSRENNDEALT-DEEFTELFTADKPVLFAYHSYAQDVRGLIYD-RPNHDNFHVVGYKEQGSTTTPFDMVRVN-----DMDRYALQAAALKLIDADKYADKIDELNAFRKKAFQFAVDNGYDIPEFTDWVYPDV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AHC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 121258 for 5879 contacts (20.6/contact) +
2D Compatibility (PS) -71387 + (NN) 7158 + (LL) 2360
1D Compatibility (HY) -19200 + (ID) 4850
Total energy: 35339.0 ( 6.01 by residue)
QMean score : 0.188
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