Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKKEERLGVLLWFRFSRFYNRNMKLTNQNLRAAGISTAQFDCIAQIGLDKEITQQQLAEKLVVTKGNVTQLLAKLEQLGYITRTK-TGREKHITLTEKGQACYRENVPKQEAFQQAQFDKLTRDEQKELLKLLKKLGE
3CJN Chain:A ((23-154))
----EGYAPYLMNRI----MGRYNANLRKEMTALGLSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDDQRSSRVYLTPAGRAVYDRLWPHMRASHDRMFQGITPQERQAFLATLNKML-
General information:
TITO was launched using:
RESULT:
Template:
3CJN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34756 for 842 contacts (-41.3/contact) +
2D Compatibility (PS) -14100 + (NN) -7350 + (LL) 968
1D Compatibility (HY) -6800 + (ID) 1500
Total energy: -63538.0 ( -75.46 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_3CJN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CJN-query.scw
PDB file :
Tito_Scwrl_3CJN.pdb
: