Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCKYKAIIFDMDGVLFDTELFYYKRRERFLKQHGITIDHLPMNFFIGGNMKQVWKSVLGDQYDTWDIDKLQQDYSRYKEDNPLPYKDLIFQDCKRVIEKLHHKGYLLGLASSSTRHDIMLALES-FNLDTYFKVILSGEE--FSESKPNPAIYNRAAELLDIPK--QQILIVEDSEKGITAGIAAGIDVWAIEDK-YFGMNQSQANVLVSDLSQFFVKLDNY
3L5K Chain:A ((27-246))
PQPVTHLIFDMDGLLLDTERLYSVVFQEICNRYDKKYSWDVKSLVMGKKALEAAQIIIDVLQLPMSKEELVEESQTKLKE-VF-PTAALMPGAEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAKRFSPPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQDFQPELFGL
General information:
TITO was launched using:
RESULT:
Template:
3L5K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92669 for 1712 contacts (-54.1/contact) +
2D Compatibility (PS) -23008 + (NN) -9053 + (LL) -220
1D Compatibility (HY) -12000 + (ID) 2150
Total energy: -139100.0 ( -81.25 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_3L5K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L5K-query.scw
PDB file :
Tito_Scwrl_3L5K.pdb
: