Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIDKFEWVKLIFATIAVVAILCFTVIGVQTIWTEDVVKDYNRHLTEQVYVDAAVNQNVNLVFY--KRGCPYCEVGKKAVINAAGKN-QFPTFYIDVESEDGQDLVKKYQVEKAATIVQIRGGRSKRVTYAVKDRYGHYQPKRQVIKEVFND--
1A8L Chain:? ((1-119))
----------------------------MGLISDADKKVIKEEFFSKM------VNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGLPAGHEFAAFLEDIVDVSREET
General information:
TITO was launched using:
RESULT:
Template:
1A8L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36553 for 801 contacts (-45.6/contact) +
2D Compatibility (PS) -11946 + (NN) -817 + (LL) 4356
1D Compatibility (HY) -5200 + (ID) 1000
Total energy: -51160.0 ( -63.87 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_1A8L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1A8L-query.scw
PDB file :
Tito_Scwrl_1A8L.pdb
: