Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---MFSWLEALYYTLIQLAKVNRLNALFLVSVVGYLCYQGI--KLVRK-----TIRNFFQLMKGFIGDRENIKKCIKNKKEALVHSWKHRQDIDWKSTGKDKSK---QLWNLMKRLATVAPSFLFLLL-GNVLFRLIYQLPFVKQDRKRFDKEMKPLLYFKNYRSFVFMGIGFSFIAFILTNYFVTVLRAAIRFLYFSIMTLRDNSQVVSFNVDSLLIQNLFNARVFVIAPILAVPIFLIGLVVAWRSAWVNFEQYRDYNHNEEGDDRFATVKEIHQQYKKVPNKTETYPGEGGVPVLHETRKNLTGLTL--KSQMLWQNRTFSRYLTNAERILGLLSTPS-GDYYIDDSTTNLITMGITRSGKGEAHIAPIIDINSRAEIQPSLIIADPKGEHYQSSYKTMRRRGYDVNVLSFQNMDWSMSYNPLALAIAAAKKGYYEMTQTRVNAVAEAIYRKTKPGSGNGNAKYWEDTSISLFNAIAMALMDRANETVRNGETDAWDTVTVRNIAKFLTDLGSEEVFVNDFGEIVENPDKNQQVKKKSKITVYFDNLRKINQEQFSKFRDMADLNFRSSDFASEETKGNVFSSMMSGINLFLQDNIAKLTSKNSIDLESVGFPRRLSIKFRSSSNVAMRNEYTHKTAKVTITSQAVWGKTTKQVIHVDAATALIDGEGYLTYVIEPQLPDQFLVTIDFNHENNGG---SAIRHKTFQFSAEKVYKKRGNVITLDDYTKKPVLDHI-KVTVLNKQDDNLLQKEDIDLIYSDNPKVIY--LVTPPNRTEYNSIVSLFLD-----QLFNANYELALSNGRKCVNRILHILDEFTNIPAIPHMDTKISIGLGQNILYYL---WIQNLKQLVSEYGENTAETIRENCSLKVYIKSTAPATNEYFSKELGTRTITRRRRSSNILDEANPNVSIENPRQELLTPTQLSKLQEGEAVILRGVKGRDNAGRKITTDPIFLHEKTSLPYRYMFLQEEFDQSMALADIPVESGHRDLDLQDIAVGAQSTFNKIIDWRMALTDRMRTNGKIPQLASRKQTIKALSQSQFTSPADLTQA---VIAEVFDEEDDDDLFFVDDVM--- |
| 4F1N Chain:A ((12-1046)) | DTHAIYKVENRHDYGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKLSKPKKYELIEALLDEDEILYKYRDRIAFNGEDTIYSHVPLEEFTLFDGCWEEMVSQITLKFSGKVGLKDIYN-DTTTQDTEVQESRMSA--------------IDKTCLLSLLGAKFMSTDDLIFQVQGNKFFIFNNFAKAIPFQIGGYLLQGFTVSLTHVYG----------GVALNTVSVPAPFIKHTKYLP---GDPRFKN------------NEKEQFTLMDWIIECYHQSKAIRDIRYNPKTAPPPSVKDLNYFVEKNTDISALLKGLKVYRPYINRSSKGIV--GFTR---------------------ESAVSMRNTIDYFKRKYDITLKYP-DMKLVNLGGKNDVVP--PECLTIVPGQKLKGQIFDTKTYIDFSAIR---------------PTEKFDLISRLSMPAIKRG---LTDSENSAYQFMRVPSRILDAP--------------VVQFKESTFEYKDKSYGT---------KHEESKGNWNMKGHQFISTPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLG------VDFNVSGKPILINQFGPPIKPTFETSPG--------EISLLNLLENIPSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSCVVWDNF---------KKNSIQYNSNVVMKMNLKLLGSNHSLSIENNKLLIDKE-----SNLPILVLGSDVTHYPEKDQNSIASLVGSYDDKFTQFPGDYMLQDGPGEEIITNVGSLMLNRLKIYQKHNNGK-----LPTKIMYFRDGVSVDQFSQVVK----------IEVKSIKESVRKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAK--NEKGEEVAVQSMGNVMPG-TVVDRGI--------------------TSVAHFDFFIQS--HQALKGTGVP----CHYWCLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCFFKAGFELNMAQATVSKNVLLPQVNDNI---KSVMYYI |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4F1N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -133993 for 7068 contacts (-19.0/contact) +
2D Compatibility (PS) -88898 + (NN) 10936 + (LL) 11968
1D Compatibility (HY) -27600 + (ID) 7800
Total energy: -235387.0 ( -33.30 by residue)
QMean score : 0.103
|
|
|