Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGLLVDGKWVDQWYDTA-STGGKFVRTVTQFRHWVTKDGSAGPSGDAGFKAESGRYHLYVSLACPWASRVLIMRKLKNLESHISISIVNPLMLENGWTFQE-Y--KGVIPDMINQSQYLYQIYQASQSDYTGRVTVPVLWDKKCHTIVNNESSEIMRMLNTAFNHIT---GNTDDYYPDSLQGQIDEMNNFIYPKINNGVYKAGFATSQNVYQKEVETLFTALDQLEKHLSDNHYLVGEQFTEADIRLFTTLVRFDTVYYGHFKCNLKAL-HDYPHLWHYTKRIY-NLPGIAETVNFDHIKKHYYGSHKTINPTGIIPAGPNLDWTI |
| 3PPU Chain:A ((41-348)) | ----------SDISKMKTEDDGSFKRKAASFRNWIQP--------NGDFTPEKGRYHLYVSYACPWATRTLIVRKLKGLEDFIGVTVVSPRMGSNGWPFANVDPFPAADSDPLNNAQHVKDLYLKVKPDYDGRFTVPVLWDKHTGTIVNNESSEIIRMFNTAFNHLLPEDKAKLDLYPESLRAKIDEVNDWVYDTVNNGVYKSGFASTQKAYEAAVIPLFESLDRLEKMLEGQDYLIGGQLTEADIRLFVTIVRFDPVYVTHFKCNLRTIRDGYPNLHRWMRKLYWGNPAFKDTCNFEHIKTHYFWSHTFINPHRIVPIGPIPDILP |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PPU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -189598 for 2506 contacts (-75.7/contact) +
2D Compatibility (PS) -31797 + (NN) -12324 + (LL) 100
1D Compatibility (HY) -30800 + (ID) 7500
Total energy: -271919.0 ( -108.51 by residue)
QMean score : 0.535
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