Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ------MAKTSKKLTKSLGPIGKLISI---IPDTT--ELIGKAIDN--SRPIIEKELDRRHEKKQTYTQLDNVVHLDINDAQVYLEQRHFNVSRIVAEPNSKWATLHPNQVVNMSPKAGRVRIGSLVKLYYITEDILEESKTLLLSK--SEKSKARQQRLTEVLSTPSQLLKKNRNK |
1GPM Chain:A ((208-404)) | WTPAKIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDMFGD--HFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTIYPDVIESAAKMGLVEPLKELFKDEVRKIGLELGLPYDMLYRHPFP |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GPM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 27984 for 1037 contacts (27.0/contact) +
2D Compatibility (PS) -16518 + (NN) 1031 + (LL) 384
1D Compatibility (HY) -8000 + (ID) 1300
Total energy: 3581.0 ( 3.45 by residue)
QMean score : 0.142
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