Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MKLSVL------DYGLIDYGKTASDAIQETILLSQEAERLGYHQFWVAEHHGVKAFSISNPELMIMHLANQTKSIKIGSGGIMPLHYSSFKLAETLKTLETCHPNRVSIGLGNSLGTVKVSN------ALRSLHKAHDYEEVLEEL-KSWLIDKSSSKEPLVQPTLS------SFPDLYVLGSGQKSAYLAAKLGLGFTFGVFPFMDKDPLTEAKKLSSLYYHQFEEYYPNKSPNLMVAAFVVIADTSEEAENIAKTLDIWMLGNKDFNEFATFPTIEEANHYQLTPEQKAKIKSNRHRMIVGDPKQVKDSLDALVNA------------SQAEELLLIPLVPGLDQRIKSLKLLSQLY |
| 1M41 Chain:A ((1-361)) | SLNMFWFLPTHGDGHYLGTEEGSRPVDHGYLQQIAQAADRLGYTGVLIPTGR-----SCEDAWLVAASMIPVTQRLKFLVA-LRPSVTSPTVAARQAATLDRLSNGRALFNLVTGSDPQELAGDGVFLDHSERYEASAEFTQVWRRLLQRETVDFNGKHIHVRGAKLLFPAIQQPYPPLYFGGSSDVAQELAAEQV------DLYLTWGEPPELVKEKIEQVRAKAAAH--GRKIRFGIRLHVIVRETNDEAWQAAERLI----SHLLEISPNLWAGVGLVR-------------GGAGTALVGDGPTVAARINEYAALGIDSFVLSGYPHLEEAYRVGELLFPLLDVAIPEIPQPQPL- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1M41.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -78497 for 2280 contacts (-34.4/contact) +
2D Compatibility (PS) -32799 + (NN) -17763 + (LL) 2232
1D Compatibility (HY) -6000 + (ID) 2400
Total energy: -135227.0 ( -59.31 by residue)
QMean score : 0.404
|
|
|