Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLFLSLERKFKAASDKEVSKQQEAYLRHHFKCYGIKSPERRMLYKELIKAAKRQAKIDWQLLDKCWQSDYREYHHFVLDYLLAMSQF-LTYNDCSRLEFYARHQQWWDSIDVLTKIFGNLSLKDDKVMNLLSEWSLDQDFWMRRLAIEHQLGFKEKTNTDILSLFILRNTGSQEFFINKAIGWALRDYSKYNKVWVKDFISNHYDELSTLSIREGSKYL--
1WPB Chain:A ((5-172))
------------QESTMEMTNAQRLILSNQYKMMTMLDPANAERYRRLQTIIERGYGLQMRELDREFGELKEETCRTIIDIMEMYHALHVSWSNLQDQQSIDERRVTFLGFD---------AATEARYLGYVRFMVNVEGRYTHFDAGTHGFNAQTPM---------------------------WEKYQRMLNVW------HACPRQYHLSANEINQIINA
General information:
TITO was launched using:
RESULT:
Template:
1WPB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34722 for 1067 contacts (-32.5/contact) +
2D Compatibility (PS) -17014 + (NN) -6433 + (LL) 4420
1D Compatibility (HY) -8000 + (ID) 1100
Total energy: -62849.0 ( -58.90 by residue)
QMean score : 0.341
(partial model without unconserved sides chains):
PDB file :
Tito_1WPB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WPB-query.scw
PDB file :
Tito_Scwrl_1WPB.pdb
: