Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKGLKSLYTLLGLISLTLLGFVAVISKQHIYLPSFNWLDWDFNLPSPIDVGMYHYFFWGALVLFVIVLLAILVVLFYPRRYTEYKLADKTG---KLMLKKSAIE----GFVKTEVLKT----------GLMKSLSVTAHLYKKKVKVDVKGLLTSRTNVPEQLEHIQSDVELGLKEFFGLEKKMNTR-VFVKQVEEENVGNAKTNKSRVE |
| 1AVP Chain:A ((1-204)) | MGSSEQELKAIVKDLGCGPY-FLGTYDKRFPGFVSPHKLACAIVNTAGRETGGVH------WMAFAWNPRSKTCYLFEPFGFSDQRLKQVYQFEYESLLRRSAIASSPDRCITLEKSTQSVQGPNSAACGLFCCMFLHAFANWPQTPMDHNPTMNLITGVPNSMLNSPQVQPTLRRNQEQLYSFLERHSPYFRSHSAQIRSATSFCHLKNM |
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General information:
TITO was launched using:
| RESULT:
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Template: 1AVP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -86633 for 1368 contacts (-63.3/contact) +
2D Compatibility (PS) -19648 + (NN) -5452 + (LL) 312
1D Compatibility (HY) -800 + (ID) 1300
Total energy: -113521.0 ( -82.98 by residue)
QMean score : 0.235
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