Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MALFFTFLKVSQVIFLVLLIAYASFLVISLVIGGVHLYEKNERKKSLTRNKEKIPISIIVPAYNESTTIVSSIDSLLHLDY---EAYEIIVVDDGSSDNTSDVLKEEFALMKISNTIDSIIATQTCKDVFQRQVGKVKLTLI-VKENGGKGDALNMGINAANYDYFLCLDADSM-LQVDSLSQISKSIQVDPTVIAVGGLVQVAQGVKIEQGKVASYRLPWRIIPCAQALEYDSSFLGARIFLDYLRANLIISGAFGLFKKDLVKAVGGYDTQTLGEDMELVMKLHFFCRNNNIPY--RICYETDAVCWSQAPTNLGDLRKQRRR |
| 3F1Y Chain:A ((89-309)) | ------------------------------------------------KRELGLTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDADSEDGTAGVAASHGAEV-----------------------YSENELMSGYGDAHGKGDAMWRALSVTRGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFVKAAYRRP-----------EEDGGGRVTELT----A-K--PLFNLFYPELAGFVQPLAGEFVADRELFCSI-PFLTG-YAVETGIMIDVLK------KVGLGAMAQVDLGERQNRHQHLRDLSRMSYAV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3F1Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -132392 for 1725 contacts (-76.7/contact) +
2D Compatibility (PS) -21640 + (NN) -4568 + (LL) 8680
1D Compatibility (HY) -2400 + (ID) 1700
Total energy: -154020.0 ( -89.29 by residue)
QMean score : 0.327
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