Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGRKWANIVAKKTAKDGANSKVYAKFGVEIYVAAKQGEPDPESNSALKFVLDRAKQAQVPKHVIDKAIDKAKGNTDETFVEGRYEGFGPNGSMIIVDTLTSNVNRTAANVRTAYGKNGGNMGASGSVSYLFDKKGVIVFAGDDADTVFEQLLEADVDVDDVEAEEGTITVYTAPTDLHKGIQALRDNGVEEFQVTELEMIPQ-S--EVVLEGDDLETFEKLIDALESDDDVQKVYHNVADF |
2KO1 Chain:A ((16-76)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------NGMTNQITGVISKFD-TNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSNLE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KO1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -2826 for 288 contacts (-9.8/contact) +
2D Compatibility (PS) -6563 + (NN) -3947 + (LL) 9924
1D Compatibility (HY) -2000 + (ID) 300
Total energy: -5712.0 ( -19.83 by residue)
QMean score : 0.535
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