Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSSYWNNYPELKKNIDETNQLIQERIQVRNKDIEAALSQLTAA--GGKQLRPAFFYLFSQLGNKENQ---DTQQLKKIAASLEILHVATLIHDDVIDDSPLRRGNMTIQSKFGKDIAVYTGDLLFTVFFDLILESMADTPFMRINAKSMRKILMGELDQMHLRYNQQQGIHHYLRAISGKTAELFKLASKEGAYFGGAEKEVVRLAGHIGFNIGMTFQILDDILDYTADKKTFNKPVLEDLTQGVYSLPLLLAIEENPDIFKPILDKKTDMA---TEDMEKIAYLVVSHRGVDKARHLARKFTEKAISDINKLPQNS------AKKQLLQLTNYLLKRKI |
| 3APZ Chain:A ((8-348)) | ----LDPFSLVADELSLLSNKLREMVLAEVP------------GVQGKQFRSTILLLMATALDV---TSELRVRQRGIAEITEMIHVASLLHDD----------------VMGNKMSVLAGDFLLSRACGALAA-LKNTEVVALLATAVEHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQ-----LREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3APZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -95422 for 2281 contacts (-41.8/contact) +
2D Compatibility (PS) -30365 + (NN) -18076 + (LL) 2884
1D Compatibility (HY) -19200 + (ID) 3750
Total energy: -163929.0 ( -71.87 by residue)
QMean score : 0.505
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