Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------MKSRKKDKLVLRLTTTLLVFGLGGVWFYNYKNDNVEPTVTSASDQTTTFIQTISPTAIEISKTYDLYASVLLAQAILESSSGQSDLSKAPNYNLFGIKGEYKGKSVQMPTLEDDGKGN---MTQIQAPFRAYPNYSASLYDYAELVSSQKYASVWKSNTSSYKDATAALTGLYATDTAYASKLNQIIETYSLDAYDK |
| 1YTL Chain:A ((17-174)) | KMATLLEKGKPVANMIKKAKRPLLIVGPD---------------MTDEMFERVKKFVEKDITVVATGSAITRFID-----------AGLGEKVNYAVLHELTQFLLDPDWKGF------DGQGNYDLVLMLGSIYYHGSQMLAAIKNFA------PHIRALAIDRYYHPNADMSFGNLWKKEEDYLKLLDEILAEL------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YTL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -14804 for 1171 contacts (-12.6/contact) +
2D Compatibility (PS) -15622 + (NN) -93 + (LL) 2984
1D Compatibility (HY) -4000 + (ID) 900
Total energy: -32435.0 ( -27.70 by residue)
QMean score : 0.145
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