Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELIL-SCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPL-VPDQADVALAAAIPRRRTDRRA-YSCWPVPGGDIALMAARAARGGVML-RQV--SALDRMKAIVAQAVLDHVTDEEYLRELTIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETDDRLARLRAGEAASIVLLTAT-AMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVGWAPINADPLPPTPRRELSQVVEWPEELLRQRC |
| 2YMV Chain:A ((3-329)) | -SDTRLDVATLANAVQLAARAPSLHNTQPWRLIAEDGELKLFLDPSRVVRSTDRSSREAV-MSCGVLLDHLRVALAAAGWDTEVQRFPNPNDRDHLATLSFRPLQFVTEGHRKRADAILARRTDRLPMSA--YVDWDAFETLLRARLGDGPVHMDTLGEDVREEVAEAAALTESLRLYDAAYHSELAWWTTPFATEDGIPQTALISAEESERVAVSRDFPVAPHSSRRPALNNDAATIVVLSTDGYSREDALDAGEGLSKVLLECTMS-GLATCPVTHVTELHTSRDIIG-RLIVRDACPQVLVRIGLAPALDEVPPPTPRRPVDAFLEVRPR------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YMV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -117308 for 2619 contacts (-44.8/contact) +
2D Compatibility (PS) -35474 + (NN) -31118 + (LL) 1676
1D Compatibility (HY) -12000 + (ID) 5350
Total energy: -199574.0 ( -76.20 by residue)
QMean score : 0.336
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