Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKLSVFFIFLFCSIATAAESLPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVER-GYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFS-GVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPY---GLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNESKKPSKPSN
1MQO Chain:A ((11-226))
-------------------NETGTISISQLNKNVWVHTELGSFNG-EAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDKGLLLHTLDLL---------------
General information:
TITO was launched using:
RESULT:
Template:
1MQO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83844 for 1834 contacts (-45.7/contact) +
2D Compatibility (PS) -23321 + (NN) -11969 + (LL) 2396
1D Compatibility (HY) -14800 + (ID) 3900
Total energy: -135438.0 ( -73.85 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_1MQO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MQO-query.scw
PDB file :
Tito_Scwrl_1MQO.pdb
: