Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MR-KIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKY-PDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTP----------------------YPITTVEIPEFAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLYES
1YUM Chain:A ((22-232))
-GKRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPPHRET-PQVSAAQRLAMVERAVAGVERLTVDPRELQRDKPSYTIDTLESVRAELAADDQLFMLIGWDAFCGLPTWHRWEALLDHCHIVVLQRPDADSEPPESLRDLLAARSVADPQALKGPGGQITFVWQTPLAVSATQIRALLGAGRSVRFLVPDAVLNYIEAHHLYRA
General information:
TITO was launched using:
RESULT:
Template:
1YUM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138347 for 1424 contacts (-97.2/contact) +
2D Compatibility (PS) -20708 + (NN) -11957 + (LL) 308
1D Compatibility (HY) -12000 + (ID) 3450
Total energy: -186154.0 ( -130.73 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_1YUM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YUM-query.scw
PDB file :
Tito_Scwrl_1YUM.pdb
: