Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
4L5B Chain:B ((40-280))
-------------------RIKKISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWS-----------LTMEQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
General information:
TITO was launched using:
RESULT:
Template:
4L5B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125314 for 1761 contacts (-71.2/contact) +
2D Compatibility (PS) -24294 + (NN) -7266 + (LL) 1068
1D Compatibility (HY) -33600 + (ID) 11300
Total energy: -200706.0 ( -113.97 by residue)
QMean score : 0.612
(partial model without unconserved sides chains):
PDB file :
Tito_4L5B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4L5B-query.scw
PDB file :
Tito_Scwrl_4L5B.pdb
: