Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATPPKRFCPSPSTSSEGTRIKKISIEGNIAAGKSTFVNILKQASEDWEVVPEPVARWCNVQSTQEEFEELTTSQKSGGNVLQMMYEKPERWSFTFQSYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESDCMNETEWTIYQDWHDWMNSQFGQSLELDGIIYLRATPEKCLNRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTSFDYLQEVPVLTLDVNEDFKDKHESLVEKVKEFLSTL
4JLK Chain:B ((39-280))
------------------TRIKKISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSNV---------LTMEQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
General information:
TITO was launched using:
RESULT:
Template:
4JLK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102518 for 1826 contacts (-56.1/contact) +
2D Compatibility (PS) -24386 + (NN) -4783 + (LL) 880
1D Compatibility (HY) -33200 + (ID) 10900
Total energy: -174907.0 ( -95.79 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_4JLK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JLK-query.scw
PDB file :
Tito_Scwrl_4JLK.pdb
: