Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLANSSSTNSSVLPCPDYRPTHRLHLV--VYSLVLAAGLPLNALALWVFLRALRVHSVVSVYMCNLAASDLLFTLSLPVRLSYYALHH-WPFPDLLCQTTGAIFQMNMYGSCIFLMLINVDRYAAIVHPLRLRHLRRPRVARLLCLGVWALILVFAVPAARVHRPSRCRYRDLEVRLCFESFSDELWKGRLLPLVLLAEALGFLLPLAAVVYSSGRVFWTLARPDATQSQRRRKTVRLLLANLVIFLLCFVPYNST----------LAVYGLLRSKLVAASVPARDRVRGVLMVMVLLAGANCVLDPLVYYFSAEGFRNTLRGLGTPHRARTSATNGTRAALAQSERSAVTTDATRPDAASQGLLRPSDSHSLSSFTQCPQDSAL |
| 4XNV Chain:A ((38-382)) | -----------SFKCALTKTGFQFYYLPAVYILVFIIGFLGNSVAIWMFVFHMKPWSGISVYMFNLALADFLYVLTLPALIFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYPKSLGRLKKKN-AICISVLVWLIVVVAISPILFY---SGTGVRKNKTITCYDTTSDEYLRSYFIYSMCTTVAM-FCVPLVLILGCYGLIVRALIY--------KMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIVCPLCGVGKDQFEEVEEPLRRKSIYLVIIVLTVFAVSYIPFHVMKTMNLRARLD----------------FQTPAMCAFNDRVYATYQVTRGLASLNSCVNPILYFLAGDTFRRR----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -221080 for 2423 contacts (-91.2/contact) +
2D Compatibility (PS) -33633 + (NN) -4739 + (LL) 1612
1D Compatibility (HY) -25200 + (ID) 3800
Total energy: -286840.0 ( -118.38 by residue)
QMean score : 0.215
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