Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDPTVP-----VFGTKLTPINGREETPCYN-----QTLSFTVLTCIISLVGLTGNAVVLWLLG-YRMRRNAVSIYILNLAAADFLFLS----FQIIRLPLRLINISHLIRKILVSVMTFPYFTGLSMLSAISTERCLSVLWPIW-YRCRRPTHLSAVVCVLLWGLSLLFSMLEWRFCDFLFSGADSS-----WCETSDFIPVAWLIFLCVVLCVSSLVLLVRILC------------GSRKMPLTRLYVTILLTVLVFLLCGLPFGILGALIYRMH-LNLEVLYCHVYLVCMSLSSLNSSANPIIYFFVGSFRQRQNRQNLKLVLQRALQDKPEVDKGEGQLPEESLELSGSRLGP |
| 1F88 Chain:A ((1-348)) | MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL-VGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAASATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV---YNPVIYIMM----NKQFRNCMVTTLCCGKNPSTTVSKTETSQVAPA---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -240499 for 2396 contacts (-100.4/contact) +
2D Compatibility (PS) -30651 + (NN) -7430 + (LL) 192
1D Compatibility (HY) -22000 + (ID) 2650
Total energy: -303038.0 ( -126.48 by residue)
QMean score : 0.265
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