Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKLWMESHLIVPETRPSP---RMMSNQTLVTEFILQGFSEHPEYRVFLF-------SCFLFLYSGALTGNVLITLAITFNPGLHAPMYFFLLNLATMDIICTSSIMPKALASLVSEESSISYGGCMAQLYFLTWAASSELLLLTVMAYDRYAAIC------------------------------------------HPLHYSSMMS--KVFCSGL--------ATAVWLLCAVNTAIHTGLMLRLDFCGPNVIIHFFCEVPPLLLLSCSSTYVNGVMIVLADAFYGIVNFLMTIASYGFIVSSILKVKTAW--GRQKAFSTCSSHLTVVCMYY---------TAVFYAY----------ISPVSGYSAG----KSKLAGLLYTVLSPTLNPLIYTLRNKEVKAALRKLFPFFRN------------ |
1WCD Chain:J ((11-431)) | -IVPFIRSLLMPTTGPASIPDDTLEKHTLRSETSTYNLTVGDTGSGLIVFFPGFPGSIVGAHYTLQGNGNYKFDQMLLTAQNLPAS--YNYCRLVSRSLTVRSSTLPGGVYALNGTINAVTFQGSLSELTDVSY---NGLMSATANINDKIGNVLVGEGVTVLSLPTSYDLGYVRLGDPIPAIGLDPKMVATCDSSDRPRVYTITAADDYQFSSQYQPGGVTITLFSANIDAITSLSVGGELVFRTSVHGLVLGATIYLIGFDGTTVITRAVAANNGLTTGTDNLMPFNLVIPTNEITQPITSIKLEIVTSKSGGQAGDQMSWSARGSLAVTIHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIPNPELAKNLVTEYGRFDPGAMNYTKLILSERDRLGIKTVWPTREYTDFREYFMEVAD |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1WCD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -275617 for 2346 contacts (-117.5/contact) +
2D Compatibility (PS) -34006 + (NN) 5801 + (LL) 768
1D Compatibility (HY) -400 + (ID) 2350
Total energy: -305804.0 ( -130.35 by residue)
QMean score : 0.091
|
|
|