Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -MTLVSFFSF----LSKPLIMLLSNSSWRLSQPSFLLVGIPGLEESQHWIALPLGIL-YLL-----ALVGNVTILFII-----------WMDPSLHQSMYLFLSM--LAAIDLVLASSTAPKALAVLLVHA------HEIGYIVCLIQMFFIHAFSSMES-GVLVAMALDCYVAICHPLHHSTILHPGVIGCIGMVVLVRGLLL-LIPFP--------------ILLGKLIFCQATIIGHAYCEHMAVVKLACSETTVNRAYGLTM------ALLVIGLDV------------LAIGVSYAHILQAVLKV------PGSEARLKAFSTCGSHICVILVFYVPGIFSFLTHRFGHHVPHHVHVLLATWYLLMPPALNPLVYGVKTQQIRQ---RVLRVFTQKD- |
4PG7 Chain:A ((20-446)) | HMKKLNIALLGLGTVGSGVVKIIEENRQQIQDTLNKDIVIKHILVRDKSKKRPLNISQYHLTEDVNEILNDDSLDIIVEVMGGIEPTVDWLRTALKNKKHVITANKDLLAVHLKLLEDLAEENGVALKFEASVAGGPNNISKFMGILNGTSNFILSKMTKEQTTFEEALDEAKRLGFAEADPTDDVEGVDAARKVVITSYLSFNQVIKLNDVKRRGISGVTLTDINVADQLGYKIKLIGKGIYEN-GKVNASVEPTLIDKKHQLAAVEDEYNAIYVIGDAVGDTMFYGKGAGSLATGSAVVSDLLNVALFFESTLPPHFELKTDKTREMEKSNFFVVVNHVKGSIENFENELKAILPFHRSLRVANYDNQSYAAVIVGLESSPEELITKHGYEVDKVYPVEGV |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PG7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -378124 for 2394 contacts (-157.9/contact) +
2D Compatibility (PS) -34519 + (NN) -2677 + (LL) 208
1D Compatibility (HY) -8000 + (ID) 2850
Total energy: -425962.0 ( -177.93 by residue)
QMean score : 0.143
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