Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------------------------------------------------------MTLGNSTEVTEFYLLGFGAQHEFWCILFIVFLLIYVTSIMGNSGIILLINTDSRFQ----TLTYFFLQHLAFVDICYTSAITPKMLQSFTEEKNLMLFQGCVIQFLVYATFATSDCYLLAMMAVDPYVAICKPLHYTVIMSRTVCIRLVAGSYIMGSINASVQTGFTCSLSFCKSNSINHFFCDVPPILALSCSNVDINIMLLVV-----------FVGSNLI-FTGLVVIFSYIYIMATI----LKMSSSAGRKKSFSTCASHLTAVTIFYGTLSY-----MYLQSHSNNSQENMKVAFIFYGTVIPMLNPLIYSLRNKEVKEALKVIGKKLF-- |
| 4KPP Chain:A ((2-396)) | DFTKEKFQLLAISSLTLPWLISLAFNYHHPALTQTLLSGLAVVSASFLISWAAETAEMDVPRSFSLAIVALLAVLPEYAVDGYFAWKAGSVGGEYVHYATANMTGANRLLIGIGWSLVAFIAFRTLKSKEVELDDGIRLEIFFLFLATLYAFTLPLKGHIS-PFDALVFVSLYAIYIYLSTKAERE-----EVEVGGVPAYLCSLKTETRRLSVVVLFLFAGFTIL----MSVEAFSEGLLETARIAGIDEFLA-VQWIAPLASESPELIVAIYFVRRFRVSASMNALISSKVNQWTLLIGTIAIIYSISAFKLQSLPLDARQSEEVLLTAAQSLFAVAILLDLKISWKEASALFLLFIVQLLFPGVEVRYIISAIYIILSLPILFA-KRKEIVESFRTVKRLISLE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4KPP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -280530 for 2315 contacts (-121.2/contact) +
2D Compatibility (PS) -29555 + (NN) -1542 + (LL) 772
1D Compatibility (HY) -19600 + (ID) 2150
Total energy: -332605.0 ( -143.67 by residue)
QMean score : 0.026
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