Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAANVSGAKSCPA--------NFLAAADDKLSGFQGDFLWPILVVEFLVAVASNGLALYRFSIRKQRPWH-PAVVFSVQLAVSDLLCALTLPPLAAYLYPPKHWRYGEAACRLERFLFTCNLLGSVIFITCISLNRYLGIVHPFFARSHLRPKHAWAVSAAGWVLAALLAMPTL-SFSHLKRPQQGAGNCSVARPEACIKCLGTADHGLAAYRAYSLVLAGLGCGLPLLLTLAAYGALGRAVLRSP------GMTVAEKLRVAALVASGVALYASSYVPYHIMRVLNVDAR-RRWSTRCPSFADIAQATAALELGPYVGYQVMRGLMPLAFCVHPLLYMAAVPSLGCCCRHCPGYRDSWNPEDAKSTGQALPLNATAAPKPSEPQSRELSQ |
1U19 Chain:A ((4-349)) | MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAE-PWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPM-SNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRY-IPEGMQCSCGIDY------YTPHEETNNESFVIYMFVVHF---IIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV-------------YNPVIYIMMNKQFRNCMVTTLCCGK------NPLGDDEASTTVSKTETSQVAPA------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1U19.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -168417 for 2690 contacts (-62.6/contact) +
2D Compatibility (PS) -34000 + (NN) -14034 + (LL) 1756
1D Compatibility (HY) 1200 + (ID) 1000
Total energy: -214495.0 ( -79.74 by residue)
QMean score : 0.181
|
|
|