Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------MPSAIEAIYIILIAGELTIGI-----WGNGFIVLVNCIDWLKRRDISLIDIILISLAISRICLL--------CVISLDGFFMLLFPGTYGNSVLVSIVNVVWTFANNSSLWFTSCLSIF----------YLLKIANISHPFFFWLKLKINKVMLAILLGSFLISLIISVPKNDDMWYHLFKVSHEENITWKFKVSKIPGTFKQLTLNLGVMVPFILCLISF------FLLLFSLVRHTKQIR------LHATGFRDPSTEAHMRAIKAVIIFLLLLIVYYPVFLVMTSSALIPQGKLVL--MIGDIVTVIFPSSHSFI----------------LIMGNSKLREAFLKMLRFVKCFLRRRKPFVP |
| 1VD5 Chain:A ((1-377)) | MWQQAIGDALGITARNLKKFGDRFPHVSDGSNKYVLNDNTDWTDGFWSGILWLCYEYTGDEQYREGAVRTVASFRERLDRFENLDHHDIGFLYSLSAKAQWIVEKDESARKLALDAADVLMRRWRADAGIIQAWGPKGDPENGGRIIIDCLLNLPLLLWAGEQTGDPEYRRVAEAHALKSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNADLLETAKRMARHFLARVPEDGVVYWDFEVPQEPSSYRDSSASAITACGLLEIASQLDESDPERQRFIDAAKTTVTALRDGYAERDDGEAEGFIRRGSYHVRGGISPDDYTIWGDYYYLEALLRLERGVTGYWYERGR--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VD5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -409717 for 2724 contacts (-150.4/contact) +
2D Compatibility (PS) -31438 + (NN) -6702 + (LL) 184
1D Compatibility (HY) 10800 + (ID) 1800
Total energy: -438673.0 ( -161.04 by residue)
QMean score : 0.267
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