Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYSAVIVKPKRNVFAVLDIGTTKIICLIVKVSGNFNYKITGTGYKIAEGINGGLI-TD-IKYASYSISSTIGLAEQVSEETIDQIYVNIAGCGILSFNVHNEIIAANHEIS-DRDI-KRVIFQTFEKYIEENVIIHNIPLRYHLDDMTDIREVSGLYGKRLSADVN-VVTASRPALTNIENCITN-NSGISMAGCIASAYSAGFACLSEDEKELGTAIVDIGGGCTAIGIFKRSKLIYANSIPIGGVHITRDIAYGLCTSIEHAERIKILYGSTVVTSIDENEYITVQSNENDEQARIPKSELVDIIRPRIEEILELVKEQFRKQKDPINKVVITGGTSRLASMKEIASYIFNKQVRIGCPESYGGLDGEYNKNPVFSAAIGSIKLIVDTFYKNNPDMLGQDGKISKLYHWVKSKVTV |
| 2YCH Chain:A ((11-375)) | ---------PRVEALGLEIGASALKLVEVS---GNPPALKALASRP---TPPGLLMEGMVAEPAALAQEIKELLLEARTRK------RYVVTALSNLAVILRPIQVP---KMPLKEMEEAVRWEAERYIP-----FPIEVVLDFAPLTPLSE-----VQEGEQVQVMVAAARQEAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLAVRVLTLSGKDFTEAIARSFNLDLLAAEEVKRTYG--------------------------RIYDAIRPVLVELTQELRRSLEFFRIQ-LSPEVGYLLGGGSKLRGLASLLTDTLGVNLEPVNPWEAVAVDPKRFESEQLQEIGPEFAVALGLALRGVEP--------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -177969 for 2682 contacts (-66.4/contact) +
2D Compatibility (PS) -35265 + (NN) -7217 + (LL) 6476
1D Compatibility (HY) -3200 + (ID) 2300
Total energy: -219475.0 ( -81.83 by residue)
QMean score : 0.422
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