Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDFIDEVKLYLKAGDGGDGCVSFRREKFVEFGGPNGGNGGKGGNIVFVSDANLNTLLNFRYRRHVKAGSGKSGASRDRSGTAGKNIVLKVPVGTQIIDEESEKIILDFNKPDMEFLIAQGGKGGLGNTNFKSSINRAPRHFTCGQFGEEKYVVLKLKVLSDVGIIGMPNAGKSKFLTRCSNAD-TKVGDYPFTTIKPHLGVAKVDNSEVVIVDIPGIITDAHLG-IGLGHKFLKHVERCKILLHLIDVTHDNVVSAYNCMRNELELYNSDLVKKEEIIVLNKCDLLRKVE----IFEKKNHL--ANYLNKEVLCLSI--GEDLQPILRLLNEKLKKGSSKKVDVYDPFKR |
| 1MKY Chain:A ((177-357)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIP------VDDEVFIDGRKYVFVDTAGL-------EKYSNYRVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMER-----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINSAL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MKY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -91185 for 1208 contacts (-75.5/contact) +
2D Compatibility (PS) -17057 + (NN) -7618 + (LL) 6648
1D Compatibility (HY) -8000 + (ID) 1600
Total energy: -118812.0 ( -98.35 by residue)
QMean score : 0.499
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