Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MELESLFQDIMDGF--AVYNNKVAVAVSGGIDSIVLLHLITSWAEKRQCPPPIALAVNHGLRPESQEEVEFVVSYAKELGVKKSFILNWKRQ--------NIKGNVQSQARKARYELLTEWCKNNDVKHLFIAHHKDDQAETFLLRLERGSGLDGLSSMDYK-SSLNGVCMLRPLLSFSRSRIKKYADFYRLKWVEDRSNQSLKYKRTLYRNLLKASGNQE-ILTERICLTTLHIKRATKALMHYTRLAFNDCVNVHDLGYIEIKLSEFYKLPEEIALRLLLYSIMVISSKHYKPRYNSLIAIFNKVLQKDNDVHCTLSGCKIRKYGESILIIRESSKIQEISVSLPLNAPIEWDNRFSCTILGNQECSVTIAPLKKTQKIPKFLKDYDCCPEVFYSLPVVLKDGKVLAYLHLNHDRKNINGDEVQCIINSTIKQNLVILAGI |
| 3VRH Chain:A ((30-254)) | --FERKVSRTIERYKLLTKDERILVAVSGGKDSAVTAYVLKKLG-----YNIECLHINLGISGYSEKSEEYAKKQCKLIGAP-LHIVRIKEILGYGIGEVKTRRPPCSYCGLTKRYIMNKFAYDNGFDAIATGHNLDDEASFLLNNILHWNTEYLAKGGPILPQQGKFIKKVKPLYEVTEREVVAYALAVGLEYIVEECPY----TTLDMKGVLNELEEKRPGTKFNFVRGYLKKKKLFEPKECKICRMPSSGDICAFCKFWGLKKEINFKVSSTDEEPFG------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VRH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -120144 for 1628 contacts (-73.8/contact) +
2D Compatibility (PS) -22627 + (NN) -6624 + (LL) 13572
1D Compatibility (HY) -4800 + (ID) 1650
Total energy: -142273.0 ( -87.39 by residue)
QMean score : 0.488
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