Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVMPDKWIREKAESFGMIEPFVDHKSSKGVMSFGLSSYGYDARVDNKFKIFTNVNSAVVD---PKD--------FSKNSFIDKETDVCIIPPNSFALASTVEYFHIPRDVLAICVGKSTYARCGIIVNVTP--LEPGWKGHVTLEFSNTTPLPAKIYANE--GACQFVFLSGESECEKSYDDIK-GKYMNQHGITLPLVK
1XS6 Chain:C ((34-184))
-----------------------------------------DVRLGNKFRTFRGHTAAFIDLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLMVHVTAHRIDPGWSGCIVLAFYNSGKLPLALRPGMLIGALSFEPLSGPA--VRPYNRREDAKYRNQQGAVASRID
General information:
TITO was launched using:
RESULT:
Template:
1XS6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47554 for 870 contacts (-54.7/contact) +
2D Compatibility (PS) -14836 + (NN) -3032 + (LL) 2600
1D Compatibility (HY) -11200 + (ID) 2450
Total energy: -76472.0 ( -87.90 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_1XS6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XS6-query.scw
PDB file :
Tito_Scwrl_1XS6.pdb
: