Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMIFRLLFLLVFISVNSYAVIKQDLSNNHYIQKINEITSKELLLPLPDDKLLGDSKAPILMIEYASLTCYHCSLFHREVFPEIKKKYIDTGKMLYIFRHFPL---DYRGLKAAMLSYCYEKQEDYFNFNKAVFNSIDSWNYSNLSDLTVLQKVAALSNLKQDTFNRCINDKE----VMDKIINDKSLAINKLGIMATPIFFIKLNNDRSHTEPNKIRHEGYKAQEYFTNVIDRLYEKAIVK
3BD2 Chain:A ((14-177))
--------------------------------------------------------GKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDQNKEWLTKELLDKHIKQL-HLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDNHIKTTPTAFI-----------NGEKVEDPYDYESYEKLLK---------
General information:
TITO was launched using:
RESULT:
Template:
3BD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115304 for 1225 contacts (-94.1/contact) +
2D Compatibility (PS) -16065 + (NN) -5099 + (LL) 5872
1D Compatibility (HY) -4400 + (ID) 1750
Total energy: -136746.0 ( -111.63 by residue)
QMean score : 0.646
(partial model without unconserved sides chains):
PDB file :
Tito_3BD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BD2-query.scw
PDB file :
Tito_Scwrl_3BD2.pdb
: