Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKFVRLLSSILVALSVIFLGYCYFTKKGIFAPAVIHNAEVKIGGDFSLINQDGQVIRSNDFKDKYMMIFFGFSSCKKICPMNLGIISETLAKLDEKTSDKLQTFFITVDPECDSTEKLKEFQQQFDYRIQMLTGERKKIDEVIANYKVYTSKVG---GEEG-INHSSIIYLIGPGGKYVTHFAADLNSDESQSDKIAAEIKKYINEL
2K6V Chain:A ((11-172))
--------------------------------------LLNPKPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVV-KEGRLVLLYSPDKA---EATDRVVADLQALL---
General information:
TITO was launched using:
RESULT:
Template:
2K6V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75289 for 1258 contacts (-59.8/contact) +
2D Compatibility (PS) -17428 + (NN) -10034 + (LL) 3964
1D Compatibility (HY) -10400 + (ID) 2000
Total energy: -111187.0 ( -88.38 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_2K6V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K6V-query.scw
PDB file :
Tito_Scwrl_2K6V.pdb
: