Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVENEGVLLVLSSPSGAGKTTILERLLERSTN-LVRSVSMTTRKPRPGEINGKDYFFVTKKEFHELCEAGQMLEYARVFENFYGIPKSFIEQNLSSGISVLLSIDWQGAFHLFELMREKVISVFILPPSMEELRLRLQKRNSDSASEIEHRLAEAQKEMS---KRDKYDYVVINDDIDKSVEEISSILDKERLKRSGV
1LVG Chain:A ((5-193))
-------RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDL-CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKAYATLKQALSEEIKKAQG-
General information:
TITO was launched using:
RESULT:
Template:
1LVG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82116 for 1400 contacts (-58.7/contact) +
2D Compatibility (PS) -21185 + (NN) -15709 + (LL) 432
1D Compatibility (HY) -10000 + (ID) 3400
Total energy: -131978.0 ( -94.27 by residue)
QMean score : 0.590
(partial model without unconserved sides chains):
PDB file :
Tito_1LVG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LVG-query.scw
PDB file :
Tito_Scwrl_1LVG.pdb
: